Annual Rate Contract For The Dna / Rna / Protein Sequencing And Other Related Services - Method Development For Metabolomics Studies - ( One Time Charges Per Sample / Project ) 3 Metabolite Extraction From Tissue, Leaf, Root And Other Sample Types 4 Targeted Metabolomics Studies Using Lcms - Ms With Data Analysis 5 Untargeted Metabolomics Studies Using Lcms - Ms With Data Analysis 6 Targeted Lipidomics Using Lcms - Ms 7 Metabolic Flux Analysis Using Lcms - Ms 8 Gas Chromatography Mass Spectrometry Gc-Ms 9 Nuclear Magnetic Resonance Spectroscopy Nmr 10 Ms Mass Spectrometry 11 High Liquid Performance Chromatography Hplc Analysis 12 Proteomics Studies 13 Protein Extraction From Tissue, Leaf, Root, And Other Sample Types 14 Protein Identification & Analysis ( Wet-Lab And In-Silico Bioinformatics Work ) 15 Protein-Protein Interaction Network Analysis & Identification ( In-Silico Bioinformatics Work ) 16 Protein Post-Translational Modification Analysis ( In-Silico Bioinformatics Work ) 17 Maldi-Ms 18 Lc-Ms ( Q-Tof ) 19 Reverse-Phase Liquid Chromatography Rp-Hplc 20 Protein Gel Electrophoresis & Imaging 21 Amino Acids Profiling 22 Surface Plasmon Resonance ( Spr ) Technology 23 Electrospray Ionisation With Tandem Mass Spectrometry ( Es-Ms / Ms ) 24 Sds-Page Electrophoresis ( Along With Sample Preparation ) 25 Nano Liquid Chromatography With Tandem Mass Spectrometry Detection ( Lc-Ms / Ms ) 26 Flow Cytometry Studies 27 Genome Size Estimation / Ploidy Level Detection 28 Fluorescence In Situ Hybridization ( Fish ) 29 Immuno Phenotyping 30 Green Fluorescent Protein ( Gfp ) Tagging 31 Chromosomal Integration Of Gfp 32 Microscopy / Imagery 33 Scanning Electron Microscope 34 Transmission Electron Microscope 35 Anatomical Assays / Detection 36 Confocal Microscopy 37 Nanoparticle / Nanomaterial Electron Microscopy 38 Energy Dispersive X Ray Spectrophotometry 39 Immuno Electron Microscopy 40 Ionomics Studies 41 X-Ray Fluorescence ( Xrf ) 42 Inductively Coupled Plasma Mass Spectrometry ( Icp-Ms ) 43 Midi Sherlock ® Microbial Identification System 44 Isotopes Labeling0 Systems / Isotope Studies / Carbon And Nitrogen Etc. 45 Antibody / Specific Molecule Synthesis 46 Antibody Development ( Monoclonal, Conjugated Igg Antibody For The Given Locus Id, Information Of The Fluorescent Label Or Enzyme With Substrate Information And Availability With Cost, Able To Use On Page Or Sds-Page Or Both, Minimum Quantity And Concentration Must Be Specified 47 Pesticide ( Herbicide, Fungicide, Insecticides Etc. ) Residue Analysis 48 Elemental Analysis 49 Elemental Analysis Eg: Nitrogen Content / Carbon / Phosphorous Etc. 50 Atomic Absorption Spectrophotometer ( Aas ) 51 X-Ray Diffraction ( Xrd ) Analysis 52 Fourier Transform Infra-Red ( Ftir ) Spectrophotometer 53 Histidine Tagging Of Microbes 54 Green Fluorescent Protein Tagging Of Microbes 55 Nutrient Concentration In Plant Sample- N, P, K, S, Fe, Zn, Cu, B And Mn 56 Nutrient Content In Soil Sample - N, P, K, S, Fe, Zn, Cu, B, Ca, Mg And Mn 57 Mechanical Analysis Of Soil- Percentage Of Sand, Silt And Clay 58 Greenhouse Gas Estimation- Methane, Carbon Di Oxide And Nitrous Oxide 59 Water Quality Analysis- Ph, Conductivity, Dissolved Oxygen And Turbidity 60 Sanger Sequencing, Genotyping, Microarray & Next Generation Sequencing Services 61 Sanger Sequencing Of Plasmid / Clones / Pcr Product / Amplicon Up To 800 Bp 62 Sanger Sequencing Of Plasmid / Clones / Pcr Product / Amplicon > 800 Bp – 1500 Bp 63 Sanger Sequencing Of Plasmid / Clones / Pcr Product / Amplicon > 1500 Bp – 3000 Bp 64 Genotyping-By-Sequencing Gbs - 100, 000 Raw Tags Per Sample 65 Genotyping-By-Sequencing Gbs - 200, 000 Raw Tags Per Sample 66 Genotyping-By-Sequencing Gbs - 300, 000 Raw Tags Per Sample 67 Microarray Affymetrix ( Rice Genome Array / Custom Arrays ) 68 Microarray Agilent ( Gene Expression / Exon Microarrays / Rice Gene Expression Microarrays ) 1 K Rica 69 Microarray Agilent ( Gene Expression / Exon Microarrays / Rice Gene Expression Microarrays ) 7 K Snp 70 Microarray Agilent ( Gene Expression / Exon Microarrays / Rice Gene Expression Microarrays ) 50 K Snp 71 Targeted Enrichment And Re-Sequencing 72 5 Kb - 10 Kb Region ( 10 X Coverage ) 73 5 Kb - 10 Kb Region ( 25 X Coverage ) 74 5 Kb - 10 Kb Region ( 50 X Coverage ) 75 Amplicon Sequencing 76 Amplicon Sequencing ( 5 Rice Genes ) 77 Amplicon Sequencing ( 10 Rice Genes ) 78 Amplicon Sequencing ( 50 Rice Genes ) 79 Complete Genome Analysis Assembly ( Resequencing New Or Pathogen / Pest / Virus Lacking A Reference Genome ) ( De Novo / Ref ) , Annotation, Comparative Analysis, Go Analysis, Kegg Pathway Mapping, Target Identification, Secondary Structure, Prediction, Mapman Analysis, Qtl Mapping, Snp Variant Calling, Graphical Representation Of The Data , Visualization Of Data, Any Specific Analysis Need Based As Intended By Indentor. 80 Miseq ( 2X150bp ) , At Least 6 Gb Raw Data With Q30 Data 81 Novaseq 6000 Or Higher Illumina Platform ( 2X150bp ) , Output At Least 10 Gb Raw Data 82 Novaseq 6000 Or Higher Illumina Platform ( 2X150bp ) , Output At Least 20 Gb Raw Data 83 Novaseq 6000 Or Higher Illumina Platform ( 2X150bp ) , Output At Least 30 Gb Raw Data 84 Novaseq 6000 Or Higher Illumina Platform ( 2X150bp ) , Output At Least 40 Gb Raw Data 85 Novaseq 6000 Or Higher Illumina Platform ( 2X150bp ) , Output At Least 50 Gb Raw Data 86 One Smrt Of Pacbio Sequel, 50 Gb Raw Data, >10 Kb Read Length Complete Library Preparation, Whole Genome / Rna-Seq Complete Analysis 87 One Smrt Of Pacbio Sequel Systems, Read Lengths>10Kb And Up To 80 Gb Raw Data 88 One Sample On Oxford Nanopore, Up To 200Mb Raw Data 89 One Sample On Oxford Promethion, Up To 30 Gb Raw Data 90 Small Rna Sequencing, 1X50bp, At Least 25 Million Reads, Q30 Values 91 Transcriptome Sequencing, 2X150bp, At Least 20 Million Raw Reads - Library Preparation Complete Transcriptome Data Analysis - ( Including Assembly ( De Novo Or Reference-Based ) , Annotation , Differential Expression, Comparative Analysis, Alternate Splice Variants, Go Analysis, Kegg Mapping, Etc ) 92 Transcriptome Sequencing, 2X150bp, Atleast 30 Million Raw Reads - Library Preparation Complete Transcriptome Data Analysis - ( Including Assembly ( De Novo Or Reference-Based ) , Annotation , Differential Expression, Comparative Analysis, Alternate Splice Variants, Go Analysis, Kegg Mapping, Etc ) 93 Transcriptome Sequencing, 2X150bp, Atleast 40 Million Raw Reads - Library Preparation Complete Transcriptome Data Analysis - ( Including Assembly ( De Novo Or Reference Based ) , Annotation , Differential Expression, Comparative Analysis, Alternate Splice Variants, Go Analysis, Kegg Mapping, Etc ) 94 Transcriptome Sequencing, 2X150bp, Atleast 50 Million Raw Reads - Library Preparation Complete Transcriptome Data Analysis - ( Including Assembly ( De Novo Or Reference Based ) , Annotation , Differential Expression, Comparative Analysis, Alternate Splice Variants, Go Analysis, Kegg Mapping, Etc ) 95 Transcriptome Sequencing -Small Rna Library Preparation Complete Small Rna Analysis Assembly ( De Novo / Ref ) , Annotation, Differential Expression, Comparative Analysis, Go Analysis, Kegg Pathway Mapping, Target Identification, Secondary Structure, Prediction, Mapman Analysis, Qtl Mapping, Snp Variant Calling, Any Specific Analysis Need Based As Intended By Indentor. 96 Iso Seq Library Prep And Sequencing, Atleast 10 Gb Raw Data Per Library - Library Preparation ( Including Assembly ( De Novo Or Reference-Based ) , Annotation , Differential Expression, Comparative Analysis, Alternate Splice Variants, Go Analysis, Kegg Mapping, Etc ) 97 Dna Isolation, Purification, Bisulfate Conversion For Methylome Analysis, Quality Check Complete Bisulfite Data Analysis Including Scanning / Distribution, Go Analysis, Methylated Region / Gene / Promoter Identification, Plotting, Graphs, Comparative Mapping, Visualization Methods, Any Specific Analysis Need Based As Intended By Intender 98 Metagenomics - Library Preparation Data Analysis Of Metagenomics Sequencing, Identification Of Organisms , Classification And Diversity Analysis 99 Degradome Sequencing - Library Preparation 100 Rad Sequencing Per Sample, At Least 2Gb Raw Data- Library Preparation 101 Genotyping Cost Of Samples For 5000-60000 Snps, 96 Samples 102 Genotyping Cost Of Sample For 5000-60000 Snps, 192 Samples 103 Genotyping Cost Of Sample For 5000-60000 Snps, 384 Samples 104 Qrt-Pcr By Sybr Green / Sample 105 Kasp Assays For Snp Genotyping 106 Gene Chip Arrays For Plants / Sample 107 Vector Construction For Crispr 108 Data Analysis Of Resequencing / Whole-Genome Data And Mut-Map Analysis, Snp Analysis, Snps Identification, Snp Annotation 109 Data Analysis Of Resequencing, Whole-Genome Analysis And Qtl-Seq Analysis, Qtl Detection, Snp Analysis, Snps Identification, Snp Annotation 1 110 Gbs Data Analysis , Snp Calling, Map Creation 111 Exome Sequencing Data Analysis Including Assembly, Annotation, Variant Analysis, Any Specific Analysis Need Based As Intended By Intender Etc. 112 Vector Designing / Construction And Synthesis 113 Next-Generation Sequencing Library Preparation For Dna 114 For Illumina 115 For Smrt Pacbio 116 For Oxford Nanopore 117 Next-Generation Sequencing Library Preparation For Rna 118 For Illumina 119 For Smrt Pacbio 120 For Oxford Nanopore 121 Next-Generation Sequencing Library Preparation For Small Rna 122 For Illumina 123 For Smrt Pacbio 124 For Oxford Nanopore
